pyMODE-TASK is a PyMOL plugin of MODE-TASK tool. MODE-TASK is a collection of open source tools to perform Principle component analysis (PCA), Kernel PCA, Incremental PCA, Multi dimensional analysis (MDS), t-distributed Stochastic Neighbor Embedding (t-SNE) on a protein MD trajectory and, Normal mode analysis (NMA) on a protein/viral capsid with a novel coarse graining algorithm.
Kindly see the detailed documentation of MODE-TASK here
Cite this project¶
Caroline Ross, Bilal Nizami, Michael Glenister, Olivier Sheik Amamuddy, Ali Rana Atilgan, Canan Atilgan, Özlem Tastan Bishop; MODE-TASK: Large-scale protein motion tools, Bioinformatics, May 2018 , https://doi.org/10.1093/bioinformatics/bty427
The project is licensed under GNU GPL 3.0